PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS782881.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 66aa    MW: 7591.71 Da    PI: 8.5108
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS782881.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08727526
                  --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   C +f++ G Ck Gd+C FaHg
  EcS782881.10  7 ACLDFRK-GACKKGDSCEFAHG 27
                  59999**.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.6E-5328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-5631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.098729IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-7727IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-6829IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-43464IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.393761IPR000571Zinc finger, CCCH-type
SMARTSM003562.63760IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
AIHFGTACLD FRKGACKKGD SCEFAHGVFE CWLHPERYRT QACKDGQSCR RRVCFFAHSP  60
DQLRVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049147.11e-37PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2
SwissprotQ6L4N42e-35C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
SwissprotQ9FU272e-35C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A059CV964e-38A0A059CV96_EUCGR; Uncharacterized protein
STRINGBra039022.1-P9e-34(Brassica rapa)
STRINGGLYMA05G36110.17e-34(Glycine max)
STRINGSi004757m2e-34(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115272126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.13e-35C3H family protein